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 Online Journal of Bioinformatics ©

 (Onl J Bioinform©)

Established 1995

ISSN  1443-2250

Scientific Board : Managing Editors:
Guerrini VH., DVM, MVSc, MCompSci, PhD (Bioinformatics, IE),
Alexandra Huger Meister BA, MA (CH),
Rachel Durnsford BA (AU).


Scientific Board:
Ben-Miled Z., BSc, MSc, PhD (Computer Engineering, USA),
Bodèn M., BSc, MSc, PhD (Machine learning, sequence analysis, AU),
Böhringer S., MD, BSc, MSc, PhD (Genetic analysis, DE),
Bourne DWA., BPharm, PhD (Pharmacokinetics, USA),
Ceraj I., DipEng, MSc (Software engineering, MIT, USA),
Chen Y., BS, ME, PhD (Bioinformatics, Software electronic engineering, USA)
Colomb RM., BSc, PhD (Informatics, CA),
Daggard G., BSc, PhD (Genetics, AU),
Dressel U., BSc, Hons, PhD (Genetics, DE),
Dubitzky W., Dipl Ing, MSc, DPhil (Bioinformatics, DE),
Filippich LJ., BSc, BVSc, PhD (Genetics, AU),
Gao S., BS, PhD (Bioinformatics, USA),
Goswami C PhD (Molecular and Genomic Pathology, USA),

Harrison J., BSc, MSc, PhD (Data-mining, USA),
Hughes I., BVSc, PhD, (Genetics AU),
Maetschke SR., MSc, PhD (Software, learning, processing, DE),
Jiang Y., BSc, MSc, Msc, PhD, (Data analysis, oncology, USA),
Lea R., BSc, PhD (Genetic analysis, AU),
Liu L  BSc, MS, PhD (Biophysics, Bioinformatics, USA).
Lund EM., DVM, MPH, PhD (Informatics, USA),
Mallick B, M.Tech, PhD (Bioinformatics, USA),
Iquebal MA., BSc, MSc, PhD (Statistics, Bioinformatics, In).
Olsson BE., BSc, MSc, PhD (Bioinformatics, SE),
O'Kane KC., BS PhD (Bioinformatics, USA),
Shadnam MR., BSc, PhD (Nanotechnology, Computer Science, CA)
Shen L., BSc, PhD (Machine Learning, USA),
Singh S PhD., (Medical Education, Orthopaedics, IN)
Song M., PhD (Text Mining, Bioinformatics, Information, USA),
Tang S., BSc, MSc, PhD (Proteomics, Bioinformatics, USA).
Teasdale RG., BSc, PhD (Computational Cell Biology, AU),
Thongboonkerd V, MD, FRCPT (Proteomics, USA).
Wang H., BEng, MSc, PhD (Gene expression, UK)
Wu D BS, PhD (Bioinformatics and drug design, USA),
Yao J MSc, PhD (Plant genomics, USA ),
Zou M., MSc, PhD (Cancer Biology and Human Genetics, USA).

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2014 (1) (2) (3)

 2013 (1) (2) (3

 2012 (1) (2) (3


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2018 (2)

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ABSTRACT:In silico docking of quercetin-3-O-β-D-glucoside from Azadirachta indica with NS2B-NS3 protease in Dengue virus.

Dwivedi VD,  Tripathi IP, Tripathi RC, Singh R, Yadava U, Mishra SK., Onl J Bioinform., 19 (2):175-180, 2018.


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ABSTRACT:Determining antioxidant stability in mixtures of heated oils by neural networks.

Rubalya Valantina S, Neelamegham P., Onl J Bioinform., 19 (2):162-174, 2018.


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ABSTRACT:In silico docking human AlkB proteins hABH6 and 7 with  inhibitors.

Karumuri S, Vidyarthi AS, Shankaracharya A., Onl J Bioinform., 19 (2):146-161, 2018.

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ABSTRACT:Fuzzy Neural Network for Classification of Protein Domains into SCOP Superfamily.

Angadi UB, Venkatesulu M., Onl J Bioinform., 19 (2):135-145, 2018.

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ABSTRACT: Virtual Laboratories and Online Instruction to Enhance Physics Education.

Ricky J. Sethi, Onl J Bioinform., 19 (2):124-134, 2018.

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ABSTRACT: GenomeBrowser: sequence analysis and annotation tool.

Fursov M, Novikova O, Shutov O, Blinov A., Onl J Bioinform., 19 (2):120-123, 2018


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ABSTRACT: In silico interaction between DNA and platelet p2y1 receptor.

Mukherjee A., Onl J Bioinform., 19 (2):114-119, 2018.


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ABSTRACT: Cognition enhanced artificial neural network for detection of rare events in DNA repeat sequences.

Meena, K, Menaka, K, Sundar, TV, Subramanian KR.,  Online J Bioinform, 19(2):107-113, 2011


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ABSTRACT: Synonymous codon usage analysis of 32 mycobacteriophage genomes.

Hassan S, Mahalingam V, Kumar V., Onl J Bioinform., 19 (2):96-106, 2018.


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ABSTRACT: In silico structural and functional analysis of calpain-like protease of L. donovani, L. infantum and L. major.

Sahoo GC, Dikhit MR, Kumar M, Das P,  Onl J Bioinform, 19 (2): 67-95, 2018


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ABSTRACT: Potential drug target sites of HIV identified by bioinformatics and intelligent machine learning techniques.

Dubey A., Onl J Bioinform 19 (2):56-66, 2018.

2018 (1)

Authors: This journal requires raw data and program files for analysis.



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ABSTRACT: Molecular Characterization and Phylogenetic analysis of BZIP protein in plants.

Dhivya S, Karthikeyan PP, Arul L, Balasubramanian P, Abhishek P., Onl J Bioinform., 19 (1):47-55, 2018

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ABSTRACT: In silico prediction of antigenic epitope of coat protein from soybean dwarf virus.

Gomase VS, Chikhale NJ.,  Onl J Bioinform., 19 (1):41-46, 2018.


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ABSTRACT: State of the art sensor-based wearables and nanorobotics for Life Sciences.

Bakopoulos E,  Papageorgiou L, Megalooikonomou V, Vlachakis D., Onl J Bioinform., 19 (1):35-40, 2018


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ABSTRACT: Characterization and statistical analysis of gene expression on human X–chromosome, Xq22.1.

Niranjan V, Tamilzharasi V, Rahiman BA , Mohomood R, Kangesan P., Onl J Bioinform., 19 (1):25–34, 2018.


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ABSTRACT: GC dispersion in non-coding RNAs from E. coli K12 genome.
Sridhar J, Rafi ZA., Onl J Bioinform 19 (1):20–24, 2018.


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ABSTRACT: Fomecin –A antiviral for NS3-4A of Hepatitis C virus.
Shanmugam R, Mani K, Vijay Kumar B., Onl J Bioinform., 19 (1):13-19, 2018.

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ABSTRACT: Detecting domain boundaries in proteins by plotting of energy of non-bonded interactions as function of In silico chain truncation in native structural format.
Guptasarma P., Onl J Bioinform, 19 (1):1-12, 2018.

2017 (3) Under redaction 2018

Authors: This journal requires raw data and program files for analysis.


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ABSTRACT: Subtractive genomics for membrane drug targets for antibiotic resistant Chlamydia trachomatis A/HAR-13,
Vijayakumari SM, Shivkumar M, Biplab B, Keshava M, Jhinuk C., Onl J bioinform., 18(3):119-125, 2017.

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ABSTRACT: In silico T-Cell Bacillus  anthracis  epitope  protective  antigen - lethal  factors. 
Nayarisseri AS, Ahmed SS, Yadav MD, Sahu J, Gupta P, Chourasia R, Mittal DR.,  Onl J Bioinform, 18(3):108-118, 2017. 


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ABSTRACT: Calculating binding free energies and docking scores with PI3K inhibitors. 
Shrivastava A, Durga Prasad K, Giri A., Onl J Bioinform., 18(3):101-107, 2017.

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ABSTRACT: In silico drug design for methylene-tetrahydrofolate reductase. 
Ram G., Onl J Bioinform., 18 (3): 86-100, 2017.

2017 (2) Under redaction 2018

Authors: This journal requires raw data and program files for analysis.



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ABSTRACT: In silico prediction for Staphylococcus aureus vaccine epitopes. 
Garima Bajetha S, Anil Rai., Onl J Bioinform., 18(2):68-77, 2017.


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ABSTRACT: In silico epitope for malaria protein subunit vaccines. 
Premnath D, Indiraleka M.,  Onl J Bioinform., 18(2):58-67, 2017.


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ABSTRACT: Machine learning models for evaluation of domain based classification of AIDS HIV-1 groups. 
Dubey A., Onl J Bioinform 18(2):53-57, 2017.

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ABSTRACT: Docking alpha glucosidase (Homo sapiens) with Pterocarpus santalinus linn  (red sandalwood) for management of diabetes mellitus. 
Challa CS1., Bulle S, Reddy VD., Nayakanti D, Nallanchakravarthula V.,  Onl J Bioinform.,  18(2):47-52, 2017.

2017 (1) Under redaction 2018

Authors: This journal requires raw data and program files for analysis.


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ABSTRACT: Model docking human indoleamine 2,3 dioxygenase for prevention of cataract. 
Vrukonda Nagalaxmi, Turlapati NagaRaju., Onl J Bioinform., 18(1):39-46, 2017.

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ABSTRACT: In silico docking hydrazone derivative with Sortase A from Staphylococcus aureus. 
Prasanna VL, Narender R., Onl J Bioinform., 18(1):30-38, 2017


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ABSTRACT: Homology docking model for histone deacetylase 8. 
Moghaddas AM., Onl J Bioinform., 18(1):19-29, 2017

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ABSTRACT: Computational identification of inhibitors of PGES-1 in rheumatoid arthritis by virtual screening and molecular docking. 
Kumar P, Mishra N., Onl J Bioinform., 18(1):7-18, 2017.

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ABSTRACT: In-Silico human, cow and sheep milk alpha casein S1, fibronectin, lactoferrin and lysozyme for prediction of hypersensitivity and malnutrition in infants 
Pandey J, Sharma S., Onl J Bioinform.,  18(1):1-6, 2017.

2016 (3) Redacted 2018

Authors: This journal requires raw data and program files for analysis.



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ABSTRACT: In Silico model and chromosomal location of TaPHT1;1 high-affinity phosphate transporter gene in wheat (Triticum aestivum L.).
Kumar A, Rathore M, Singh KP, Tyagi PK, Sharma N., . Onl J Bioinform., 17(3):180-191, 2016

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ABSTRACT: Review:Molecular modeling computer aided drug design.
Singh N, Upadhyay S, Jaiswar A, Tripathi A, Mishra N., Onl J Bioinform., 17(3):168-179, 2016.

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ABSTRACT: Homology modeling and molecular dynamic ABC transporter1 anti-bacterial in Antheraea mylitta.
Madipelli K, Rao PN., Onl J Bioinform., 17(3):159-167, 2016.

2016 (2)

Authors: This journal requires raw data and program files for analysis.




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ABSTRACT: In silico binding and inhibition of Sortase A methicillin resistant Staphylococcus aureus.
Souri S, Sharma AK, Sharma G., Onl J Bioinform., 17(2):148-158, 2016.

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ABSTRACT: Molecular cloning and In-silico analysis of pectin lyase from Aspergillus niger MTCC 404
Dubey AK, Yadav S, Anand G, Singh VK, Yadav D., Onl J Bioinform., 17(2):136-147, 2016.

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ABSTRACT: In-Silico docking marine Streptomyces  coumarin-6-ol, 3, 4-dihydro-4, 4, 5, 7-tetramethyl with bacterial and blood protein. 

Abirami M, Kannabiran K., Onl J Bioinform, 17(2):129-135, 2016.

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ABSTRACT: Molecular docking of indolizine heterocyclics. 

Murali Krishna K, Lekha P, Raman PK, Raveendra Reddy P., Onl J Bioinform., 17(2):116-128, 2016

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ABSTRACT: Molecular docking imidazo[1,2-b]pyridazine on methicillin resistant Staphylococcus aureus.

Raman PK, Murali Krishna K, Ramana PV*., Onl J Bioinform., 17(2):105-115, 2016.

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ABSTRACT: In silico docking of curcumin inhibitor with α-Glucosidase in type 2 diabetes.

Tarigopula SP., Onl J Bioinform., 17(2):96-104, 2016.

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ABSTRACT: In silico dock-binding for anti-cancer oxadiazole derivatives.

Vijay JT, Babu KV, Uma A., Onl J Bioinform, 17(2):80-95, 2016.

2016 (1)

Authors: This journal requires raw data and program files for analysis.




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ABSTRACT: Carragheen (Chondrus crispus) seaweed molecular marker database (CaMM-Db).

Bhati J, Sahu TK, Pande PK., , Onl J Bioinform., 17(1):69-79, 2016

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ABSTRACT: In silico modelling-docking diazepin derivatives.

Pyde AN., Onl J Bioinform., 17(1):53-68, 2016

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ABSTRACT: Homology modelling and structure for Neplanocin A derivatives.

Urama DC, Tarigopula SP, Pasha KM, Daddam JR., , Onl J Bioinform., 17(1):41-52, 2016.

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ABSTRACT: In silico agonist for human extracellular superoxide dismutase SOD.

Hema K, Swargam S, Pradeep N, Umamaheswari A.,  Onl J Bioinform., 17(1):29-40, 2016.

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ABSTRACT: In silico 3D structure of pectin lyase protein of Aspergillus flavus NRRL 3357.

Dubey AK, Yadav S, Tanveer A, Anand G Singh VK, Yadav D. Pectin., Onl J Bioinform., 17(1):13-28, 2016

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ABSTRACT: Structure based drug design targets for severe acute respiratory syndrome (sars) coronavirus.

Kumar V, Goswami S, Namdeo R, Jain R., Onl J Bioinform., 17(1):1-12, 2016.

2015 (3) Redacted 2018.

Authors: This journal requires raw data and program files for analysis.



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ABSTRACT: Machine learning classification for HIV biomarkers.

Dubey A,  Onl J Bioinform., 16(3): 344-356, 2015.

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ABSTRACT: Gene expression in sickle cell patients: Putative  genes associated with variability in pleiotropic phenotype.

Das I, Mishra H, Khodiar PK, Patra PK., Gene expression in sickle cell patients, Onl J Bioinform., 16(3): 327-343, 2015.

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ABSTRACT: Model simulation phylogenetics of erythropoietin expressed from cho cell line.

Mettaa MK, Tantravahib S, Daddam JR.,  Onl J Bioinform., 16(3): 318-326, 2015.

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ABSTRACT: In silico analysis of arsenate reductase gene in biological systems.

Tiwari S, Sarangi BK, Nasim J, Yadav D., Onl J Bioinform., 16(3): 303-317, 2015.

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ABSTRACT: Model protein docking l-glutaminase for anti-cancer activity.

Vijay Jesuraj SA, Jeya Praya SM, Ravikumar M.,  Onl J Bioinform., 16(3): 293-302, 2015

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ABSTRACT: Molecular modelling-docking cell surface receptor CD10 target for doxorubicin.

Mishra D, Singh VK, Singh S, Narayan G, , Onl J Bioinform., 16 (3): 286-292, 2015.  

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ABSTRACT: 3D QSAR, CoMFA and CoMSIA In silico docking of natural flavonoid cancer inhibitors.

Kumar Gunda S., Onl J Bioinform., 16 (3): 263-285, 2015.  

2015 (2) Redacted 2018.


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ABSTRACT: Review:Genome-wide copy number variation from next generation sequencing data.

Loukatou S, Chatzinikolaou P, Vlachakis D, Kossida S., Onl J Bioinform., 16 (2): 254-262, 2015.

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ABSTRACT: Integrating eHealth in HIV/AIDs intervention programmes in Nigeria,

Taiwo OS.,  Onl J Bioinform., 16 (2): 247-253, 2015.

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ABSTRACT: Biclustering of tuberculosis microarray data.

Pradhan S, Verma CK.,  Onl J Bioinform., 16 (2): 226-246, 2015

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ABSTRACT: Anti-tubercular activity and molecular docking of dihydro-pyrimidinone derivatives.

Beda PD, Vedula SG, Daddam JR.,  Onl J Bioinform., 16 (2): 202-225, 2015.  

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ABSTRACT: Respiratory gating for lung cancer radiotherapy.

KonstantaraK, Danelakis A, Tzogogianni D, Polychronidou E, Venieris G,  Papageorgiou L,  Vlachakis D., Onl J Bioinform.,  16 (2): 194-201, 2015.

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ABSTRACT: Predicting evolution of colored vision in mammals through systems biology.

Sharma S, Saxena P., Onl J Bioinform., 16 (2): 188-193, 2015.

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ABSTRACT: Antibacterial activity and molecular docking in Musa paradisiaca (Banana) flavonoids.

Sree J, Gunda SK.,  Onl J Bioinform., 16 (2): 179-187, 2015

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ABSTRACT: In Silico 2, 5- disubstituted-1, 3, 4-oxadiazole antibacterial activity.

Nagarjun PA,  Rao PN.,  Onl J Bioinform., 16 (2): 156-178, 2015.  

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ABSTRACT: In silico model simulation docking of tyrosine kinase inhibiting leukemia quinazolines.

Bathula R, Rani Satla S., , Onl J Bioinform., 16 (2): 144-155, 2015.

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ABSTRACT: Prioritizing In Silico drug targets in metabolic pathway of Laribacter hongkongensis.

Aslam Tayubi I., Onl J Bioinform., 16 (2): 129-143, 2015

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ABSTRACT: In Silico inhibitors for PTP1B as a drug target for diabetes.

Galande S, Ambhore S, Jena L, Kumar S.,  Onl J Bioinform, 16 (2): 121-128, 2015.


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ABSTRACT: In silico model design for GPI12 anchored protein,

Bhagyasri RG, Chandrasekhar KB,  Muralidhara RD., IOnl J Bioinform., 16 (2): 109-120, 2015

2015 (1) Redacted 2018.

Authors: This journal requires raw data and program files for analysis.





ABSTRACT: In silico binding of Piper longum plant anti-diabetic derivatives with alpha glucosidase.

Sharmila UV, Sharma AR, Sharma G., Onl J Bioinform, 16 (1): 98-108, 2015


ABSTRACT: In silico docking of meliantrol, β-sitosterol, curcumin, vanillic and syringic acids  to penicillin binding protein 2a on methicillin resistant Staphylococcus aureus.

Masroor H, Parvateesam M, Daddam JR, Naidu NV., I Onl J Bioinform., 16 (1): 88-97, 2015


ABSTRACT: Molecular modeling and in-silico characterization of Alkaline Protease from Bacillus circulans MTCC 7906.

Sharma AD, Kaur GRI, Kocher S1, Onl J Bioinform., 16 (1): 61-87, 2015


ABSTRACT: Biological databases as key for data integration, analysis and visualization.

Polychronidou E, Vlachakis D, Papageorgiou L, Vlamos P., , Onl J Bioinform., 16 (1): 51-60, 2015.


ABSTRACT: Support vector machine to predict human death domain protein-protein interactions.

Nemade PA, Pardasani KA., Onl J Bioinform., 16 (1): 29-50, 2015.


ABSTRACT: Characterization of mouse body insulin genes with genetic network systems.

Zeeshan A, VermaCK., Onl J Bioinform., 16 (1): 18-28, 2015.


ABSTRACT: Modelling simulation phylogenetics of leukemia FMS tyrosine kinase 3 (FLT3).

Kotha P, Rayalu Daddam J, Sai Gopal Divi VR,  Dakinedi SR, Dowlathabad M., Onl J Bioinfo., 16 (1): 8-17, 2015


ABSTRACT: Systems biology prediction of evolutionary process for coloured vision in mammals.

Sharma S, Saxena P., Onl J Bioinform, 16 (1): 1-7, 2015.



2014 (3) Redacted 2018.


Re-annotation of hypothetical proteins of Geobacter sulfurreducens PCA by  integrated computation,

Selvaraj A, Chinnasamy Perumal R, Chowdhary N, Kannan Kandavel P, Radhakrishnan V, Kumar Gopal R., Onl J Bioinform., 15 (3): 253-266, 2014.


Data mining techniques for biological sequence classification

Dubey A., Onl J Bioinform., 15 (3): 243-252, 2014


Characterization of mouse insulin gene through genetic and network approaches.

Arif Z, Verma CK.,  Onl J Bioinform., 15 (3): 231-242, 2014.

2014 (2) Under redaction 2018




In silico drug design inhibitor for methylene-tetrahydrofolate reductase.

Ram G., Onl J Bioinform., 15 (2): 218-230, 2014.


Classification of Type-2 Diabetes Microarray Data by Support Vector Machine and Naive Bayes Classifier

Mekala R, Verma CH., , Onl J Bioinform., 15 (2): 210-217, 2014.


In silico 17β-Hydroxysteroid dehydrogenase fungicide for leaf spot disease (Cercospora sp).

Singh VK, Chand R, SinghBD., Onl J Bioinform., 15 (2): 198-209, 2014


Structure of tumor suppressor gene  protein (PTEN) by homology modelling.

Rathore B, Shakya M., Onl J Bioinform., 15 (2): 191-197, 2014.


In silico identification of B- and T-cell epitopes from a new wheat associated (Triticum aestivum) allergen Tri a 37,.

Tuhin Ali M, Palit P, Hasan S., Onl J Bioinform., 15 (2): 178-190, 2014


Molecular dynamic differences between isoform specific and class I PI3K inhibitor.

Shrivastava A,  Prasad KD, Giri A., Onl J Bioinform., 15 (2): 168-177, 2014.


Finite element model of calcium distribution in oocytes for one dimensional unsteady state case.

Ahmad Naik P, Pardasani KR.,  Onl J Bioinform., 15 (2): 157-167, 2014

2014 (1) Under redaction 2018



ABSTRACT: Mining quantitative associations in peptide sequences of mosquito borne flavivirus.

Rajput P, Chouhan U.,  Onl J Bioinform., 15 (1): 141-156, 2014.


ABSTRACT: ASPMP – A Biochemical Pathway Resource for Aspergillus terreus NIH2624.

Subazini TK, Ramesh Kumar G., Onl J Bioinform 15 (1): 133-140, 2014.


ABSTRACT: In silico identification of universal HLA stimulating B and T-cell restricted mage epitopes for vaccine development.



ABSTRACT: Calculating binding free energies and docking scores with PI3K inhibitors,

Shrivastava A, Durga Prasad K, Giri A.,  Onl J Bioinform., 15(1):106-113, 2014.



ABSTRACT:   Molecular dynamic simulation docking inhibitors for falcipain – 2.

Saddala MS, Babu DK, Bhavani G, Ayisha S, Usha Rani A., Onl J Bioinform., 15(1): 98-105, 2014.



ABSTRACT:   Structure prediction of alpha-synuclein protein and link with neurodegenerative disease.

Singh R, Gaur NK, Mohan A, Gangwar P., Onl J Bioinform., 15(1)87-97, 2014.


ABSTRACT:   Functional diversity of melanoma antigen proteins implicated in tumor/cancer related pathways.

Achinko DA, Ojwank AME, Dormer A., Onl J Bioinform., 15 (1): 54-86, 2014.


ABSTRACT:  Proteome database for Mycobacterium tuberculosis strains H37Rv versus H37Ra.

Jena L, Kumar S.,  Onl J Bioinform., 15(1): 49-53, 2014.


ABSTRACT:  Prediction of secondary structure of human OPTC (Opticin) gene in region 1q32.1 of chromosome 1.

Kumar A,  Khawaja Z.,  Onl J Bioinform., 15(1): 35-48, 2014


ABSTRACT:  A novel In silico peptide vaccine design for Streptococcus mutans.

Bower B, Dormer A., , Onl J Bioinform  15(1):1-34, 2014.

2013 (3) Under redaction 2018

Authors: This journal requires raw data and program files for analysis.




ABSTRACT: In silico inhibitors for human papillomavirus 16 E7 protein,

Kumar S, Jena L, Mohod K, Daf S, Varma A.,  Onl J Bioinform., 14 (3): 302-310, 2013.


ABSTRACT: In silico inhibitors for falcipain-3 in Plasmodium falciparum.

Saddala MS, Gayathri P, Obaiah J,. Vallamma C. Usha Rani A., Onl J Bioinform., 14 (3): 293-301, 2013.


Virtual dihydroxy acid dehydratase inhibitors for tuberculosis

Jena L, Kumar S., , Onl J Bioinform., 14 (3): 282-292, 2013.


ABSTRACT: Homology modelling of laccase from white-rot fungus Schizophyllum commune.

Reddy GV, Vijaya CH, Venkateswarlu K., , Onl J Bioinform., Volume 14 (3): 274-281, 2013.

2013 (2) Under redaction 2018

Authors: This journal requires raw data and program files for analysis.




ABSTRACT: Identification  of  PI3K inhibitor scaffold based on ligand and receptor pharmacophore model.

Shrivastava A, Prasad KD, Giri A., Onl J Bioinform., 14 (2): 258-273, 2013. 


ABSTRACT:  In silico proteins of Flavobacterium columnare as therapeutic candidates for columnaris disease in fish.

Murali S, Kumar S, Rajendran KV, Jahageerdar S., Onl J Bioinform., 14 (2): 235-257, 2013.


ABSTRACT: Virtual analysis of catalytic site in Plasmodium yoelii yoelii.

Kumar A.,  Onl J Bioinform.,  14 (2): 226-234, 2013.


ABSTRACT:Virtual inhibitors of L-Type calcium channel.

Saddala MS, Rani U., Onl J Bioinform.,  14(2):213-225, 2013.


ABSTRACT: Selection pressure analysis of African swine fever virus attachment protein p12 gene.

Chen YF, Chen Y.  Onl J Bioinform., 14(2):207-212, 2013.


ABSTRACT: Monte Carlo with simulated annealing model for constructing phylogenetic network from nucleotide sequences.

Dwivedi AK, Chouhan U.,  Onl J Bioinform 14 (2): 197-206, 2013.


ABSTRACT: Structure based virtual screening for DNS methyl transferase-1 inhibitors.

Saddala MS, Jyothi P, Usha Rani A.,  Onl J Bioinform 14 (2): 186-196, 2013.


ABSTRACT: Virtual In silico inhibitors of estrogen receptor alpha (ERα)

Saddala MS, Mallikarjuna A, Latha U, Usha Rani A.,  Onl J Bioinform 14 (2): 168-185, 2013.


ABSTRACT:Evolutionary lineage of lateral gene transfer in biofilm-forming human pathogenic microorganisms. 

Mathur N, Chug R.,  Onl J Bioinform.,  14 (2): 160-167, 2013


ABSTRACT: In Silico Inhibitors for Plasmodium falciparum lactate dehydrogenase. 

Saddala MS, Kumar KK, Usha Rani A., Onl J Bioinform.,  14 (2): 146-159, 2013


ABSTRACT: Subtractive Genomic identification of drug targets in Leishmania Donovani and l. Infantum.

Shree T, Khan SA, Saxena S., Onl J Bioinform.,  14 (2): 138-145, 2013


ABSTRACT: In silico genome analyses of putative white spot syndrome virus vaccine sites.

Amos SJ, Nayak S, Umadevi K., Onl J Bioinform.,  14 (2): 126-137, 2013


ABSTRACT: Predicted structure of an unknown protein sequence in US patent 8211428.

Kumar A,  Zakir Khawaja M,  Ul Haq Qureshi A., A. Onl J Bioinform.,  14 (2): 118-125, 2013.



ABSTRACT: In Silico gene prediction for autosomal recessive cone-rod dystrophy (CORD),

Khattak NA, Rauf S, Sehgal SA, Shahwar D and Ismail M., Onl J Bioinform., 14 (2): 104-117, 2013

2013 (1) Under redaction 2018




ABSTRACT: In silico prediction of Staphylococcus aureus epitopes (Mastitis vaccine),

Bajetha G, Rai S, Rai A., 14(1):96-103, 2013.


ABSTRACT: New footprints into metazoan C-1 family cadherin evolution
Hasenahuer MA, Casco VH, Izaguirre MF., 14(1):76-95, 2013. 



ABSTRACT: Identification of single nucleotide polymophisms using CLC and SeqMan transcriptome sequencing data
Sajnani MR, Bhatt VD, Joshi CG., 14(1):66-75, 2013.



ABSTRACT: Sequence informatics of carbonic anhydrase from different source organisms

Dwivedi VD, Arora S, Sharma J, Pandey A., 14(1):56-65, 2013.



ABSTRACT: Amino acid composition model for prediction and identification of Alpha and Epsilon-proteobacteria

Shanker A, Pardasani KR., 14(1):51-55, 2013.


ABSTRACT: In Silico drug targets for infectious endocarditis.

Priyadarshini V, Pradhan D, Munikumar M, Swargam S, Umamaheswari A, Rajasekhar D., 14(1):32-50, 2013.


ABSTRACT:Statistical analysis of codon usage in extremely halophilic bacterium Salinibacter ruber DSM13855.

Sanjukta RK, Farooqi MS, Sharma N, Rai N, Mishra DC, Rai A, Singh DP, Chaturvedi KK., 14(1):15-31, 2013.


ABSTRACT:In silico prediction and conservancy analysis of promiscuous epitopes in novel adenovirus HAdV-65.

Islam R, Khan L, Gazi A, Hossain M, Shafrin F, Zaman A, Polash AH., 14(1):9-14, 2013.


ABSTRACT:  In silico analysis of flavopiridol analogues with Cdk2 for cancer therapy.

Jabin D, Vidyarthi AS, Shankaracharya S., 14(1):1-8, 2013.

 2012 (3) Under redaction 2018




ABSTRACT:Prediction of crucial water molecules during interaction of curcumin and demethoxycurcumin at active sites of multiple target proteins

Singh N, Butle A, Misra K., 13(3):418-431, 2012.



ABSTRACT: Amino acid sequences based phylogenetic and motif assessment of lipases from different organism

Yadav SK, Dubey AK, Yadav S, Bisht D, Darmwal NS, Yadav D., 13(3):400-417, 2012.



ABSTRACT: Glycosyltransferase sequence informatics from different source organisms

Dwivedi VD, Pandey AK, Mishra SK., 13(3):390-398, 2012.



ABSTRACT: K-shell decomposition based analysis of S. pombe protein networks

Singh PK Shakya M., 13(3):382-390, 2012



ABSTRACT:  A Parkinson’s disease mitochondrial dysfunction pathway with gene hubs.
Balakrishnan ik, Rangasamy s, Natarajan J., 13(3):375-381, 2012.

2012 (2) Under redaction 2018

Patra MC, Rath SN, Bhoi GK, Pradhan SK., 13(2):360-374, 2012.



ABSTRACT:Virtual PfkB Mycobacterium tuberculosis H37Rv protein

Nayak S, Umadevi K, Jagannath M., 13(2):331-359, 2012.



ABSTRACT:Characterization of Coilin protein nucleotide binding region in Homo sapiens.

Zaman A., 13(2):314-330, 2012.



ABSTRACT:Riboswitch as a target for Streptococcus pneumoniae.

Mujwar S, Pardasani KR., 13(2):285-313, 2012.



ABSTRACT:Machine learning models to classify HIV membrane and soluble proteins

Dubey A, Chouhan U., 13(2):274-284, 2012.



ABSTRACT:Homology and molecular docking of Pseudomonas aeruginosa RND MexY efflux pump

Bhaskar BV, Munichandrababu T, Bhuvaneswar C, Rajendra W., 13(2):260-273, 2012.


ABSTRACT:In silico characterization of bacterial, fungal and plant polygalacturonase protein sequence

Dubey AK, Yadav S, Rajput R, Anand G, Yadav D. 13(2):246-259, 2012.


ABSTRACT:Amplification, In-silico classification, characterization and molecular modeling of Histone H2B gene from Setaria cervi

Yadav SS, SinghVK, Liebau E, Rathaur S., 13(2):232-245, 2012.



ABSTRACT:Molecular docking of a beta-2-microglobulin drug target

Navya P, Hema K, Munikumar M, Swargam S, Umamaheswari A., 13(2):222-231, 2012.



ABSTRACT:Microarray informatics and virtual screening for acute myeloid leukemia targets.

Shree T, Banerjee S, Srivastava S., 13(2):214-221, 2012.



ABSTRACT:Mining fuzzy associations among amino acids of class A GPCRs.

Kumari T, Pardasani KR., 13(2):202-213, 2012.



ABSTRACT:Drug target H1N2 (swine influenza) and H5N2 (avian influenza):ligand structure design

Sivan A, Antony S, Reegan AD., 13(2):192-201, 2012.



ABSTRACT:Amino acid sequence analysis of glutamate dehydrogenase from different source organisms

Dwivedi VD, Mishra SK., 13(2):184-191, 2012.


2012 (1) Under redaction 2018




ABSTRACT:In silico novel MYB transcription factor [EaMYB2R] from Erianthus arundinaceus.
Kulkarni P, Devarumath RM., 13(1):167-183, 2012.



ABSTRACT:In Silico characterization of glycosidase protein sequences from bacterial sources. Comment on and/or review this paper
Yadav V, Yadav KDS., 13(1):156-166, 2012.



ABSTRACT:In silico analysis of rice and Arabidopsis spp. PIP genes.
Ramole S, Chouhan U., 13(1):144-155, 2012.



ABSTRACT:Pharmacophore model of Dengue virus RNA dependent RNA polymerase
Shree T, Asnet JM, Kumar R, Mohan T, Shenbagarathai R., 13 (1):130-143, 2012



ABSTRACT:In silico analysis and homology model of legume antioxidant proteins.
Sarika M, Iquebal A, Rai A., 13 (1):120-129, 2012       



ABSTRACT:EST secretome analysis of Radopholus similis nematode.
Sangeetha K, Babu RO, Eapen SJ., 13(1):103-119, 2012       



ABSTRACT:Homology model of sugarcane soluble acid invertase
Hemanthkumar M, Umamaheswari A., 13(1):93-102, 2012       



ABSTRACT:Insights to sequences of PCR amplified pectin lyase genes from different fungal strains
Dubey AK, Yadav S, Anand G, Bisht NC, Yadav D., 13(1):80-92, 2012


ABSTRACT:Molecular modelling and docking of Brugia malayi glutathione reductase
Yadav SS, Singh VK, Liebau E, Rathaur S., 13(1):59-79, 2012


ABSTRACT:In silico homology model of mutated PTEN protein inducing meningioma
Kaur J, Mohan A, Kumar S, Pallavi A, Malakar K., 13(1):50-58, 2012


ABSTRACT:Simulation of riboflavin synthase in Eremothecium gossypii  conversion of 6,7-dimethyl-8-ribityllumazine to riboflavin
Idrus S, Tambunan USF., 13(1):41-49, 2012


ABSTRACT:Model and molecular docking substrate stabilization of Microsporum canis keratinase
Karthik MVK, Syed H, Goswami T, Shukla P., 13(1):33-40, 2012


ABSTRACT:In silico analysis of bacterial DNA polymerases and molecular phylogeny.
Sridhar M, Manjunath A, Bala Chauhan J, Zameer F., 13(1):27-32, 2012


ABSTRACT:In silico horizontal gene transfer and functional motif in GshF protein of Listeria monocytogenes
Srinivas V, Kreft J, Gopal S., 13(1):14-26, 2012


ABSTRACT:In Silico analysis of a consensus QTL for drought resistance in rice (Oryza Sativa L.)     

Pradeepa N, Shanmuga PP, Jebakumar Prince KS, Kavitha S, Poornima R, Prabhakar MS . Chandra Babu R., 13(1):1-13, 2012

2011 (2).




ABSTRACT:In Silico substrate specificity in bmgt1 and bmgt2 genes of Bacopa monniera glycosyltransferases      

Sharma R, Ruby R, Khan BM, Suresh CG., 12(2):413-430, 2011


ABSTRACT:In Silico model of Homo sapiens Nectin-4: a novel anticancer drug target.       

Das D, Preet R, Mohapatra P, Satapathy SR, Kundu CN., 12(2):395-412, 2011


ABSTRACT:Prediction of 3D model of nuclear export protein of influenza A virus.       

Khewariya D., 12(2):386-393, 2011


ABSTRACT:Evaluation of the severity of asthma by using an artificial neural network       

Kumar A, Singh S, Vennila JJ., 12(2):379-385, 2011


ABSTRACT:In silico T cell antigens from proteome of H1N2 swine influenza A virus       

Verma SK, Singh Yadav SK, Kumar A., 12(2):371-378, 2011


ABSTRACT:Analysis of inhibitory activity of 2, 4-diamino-5-methyl-5-deazapteridine (DMDP) derivatives against recombinant human dihydrofolate reductase.      

Singh S, Kumar A, Vennila JJ., 12(2):357-370, 2011


ABSTRACT:Model of a Zn2+ binding domain of peptidase M48 Ste24p from Cyanothece Sp. (Strain PCC 7822)         

Patra MC, Rath SN, Bhoi GK, Pradhan SK., 12(2):345-356, 2011


ABSTRACT:Epigenomic regulation of genes involved in anti-stress mechanism in Arabidopsis thaliana using high-throughput genomic data         

Singh N, Mishra H, Misra K., 12(2):329-344, 2011


ABSTRACT:Genetic diversity of hatchery stocks of Macrobrachiumrosenbergii assessed by microsatellite DNA,           

Suresh E, Reddy AK, Krishna G, Chaudhari A, Sharma R, Babu PG., 12(2):323-328, 2011 



ABSTRACT:Computational analysis of K-Hefutoxin interaction with Kv channels and L-carnitine for molecule against scorpion envenomation.            

Umamaheswari A, Pradhan D, Priyadarshini V, Munikumar M, Rao S., 12(2):304-322, 2011 



ABSTRACT:Molecular docking ribavirin with RNA-dependent RNA polymerase crimean-congo hemorrhagic fever virus                  

Kumar Verma S, Singh Yadav SP, Singh R, Kumar A.,  12(2):304-313, 2011 



ABSTRACT:Toxicity of  butachlor assessed by molecular docking to NusB and GroES protein.            

Kumari N, Singh VK, Narayan OP, Rai LC.,  12(2):289-303, 2011 



ABSTRACT:Neighbour joining microarray data clustering algorithm                

Rajendran B, Murugan V, Premnath K,  Gomez P.,  12(2):274-288, 2011 



ABSTRACT:Phylogenetic analysis of mitochondrial 16s rRNA and NADH Dehydrogenase genes of Takifugu (Pisces: Tetraodontiformes: Tetraodontid).                

Jagannath M, Umadevi K, Subhalaxmi N.,  12(2):255-273, 2011 



ABSTRACT:In-silico inhibition of telomerase associated proteins.                

Jyoti P, Vidyarthi AS, Shankaracharya M.,  12(2):243-254, 2011 



ABSTRACT:A least squares method to determine reticulation in eight grass plastomes                

Mathur R, Adlakha N., 12(2):230-242, 2011 



ABSTRACT:Homology modeling and active site analysis of MurB Rrductase: A potential drug target of Legionella pneumophila.               

Priyadarshini V, Pradhan D, Munikumar M, Umamaheswari A., 12(2):217-229, 2011 



ABSTRACT:Comparative modeling studies of a hypothetical protein YHR105W from S.Cerevisae genome.               

Rathankar N, Nagendra HG., 12(2):207-216, 2011 

2011 (1).




ABSTRACT:Computational analysis of diversity coding for 3-KetoAcyl-Co A synthase 20 for fatty acid elongation pathway in plants.               

Grover M, Kaur S., 12(1):198-206, 2011 



ABSTRACT:In silico identification of residues for anoxia tolerance across species                

Sahu TK, Rao AR, Alka B, Behera BK, Mohapatra T., 12(1):175-197, 2011 



ABSTRACT:Detection and classification of two-component osmoregulatory systems.                

Srividhya KV, Krishnaswamy S., 12(1):167-174, 2011 



ABSTRACT:Identification of potential drug targets in M1 strain of Streptococcus pyogenes by differential genomics                

Trivedi N, Sarangi AN, Naik S, Aggarwal R., 12(1):149-166, 2011 



ABSTRACT:Homology interaction of acetylcholinesterase (ACh) Toxin C from Dendroaspis polylepis with human ACh          

Sahu TK, Patra MC, Sarang AN., 12(1):139-148, 2011 



ABSTRACT:Algorithm to detect Denial of Service (DDoS) in Gnutella hybrid P2P network mapped to artificial immune system          

Uddin M, Rahman AA., 12(1):115-138, 2011 



ABSTRACT:Molecular docking for substrate stabilization in Thermomyces lanuginosus  11 xylanases.          

Karthik MVK, Shrivastava S, Shukla P., 12(1):107-114, 2011 



ABSTRACT:Virtual screening of human MEK1 protein inhibitors catechin and gw8510.          

Potluri V, Pradhan D, Umamaheswari A., 12(1):98-106, 2011 



ABSTRACT:Self organizing  algorithm for multiple sequence alignment          

Amouda V, Buvaneswari S, Kuppuswami S., 12(1):74-84, 2011 



ABSTRACT:Partial sequence clone of canine mammary tumor metalloproteinase MMP11 catalytic domain     

Sunil Kumar BV, Kataria M, Kumar R, Kumar KA, Vishwanatha Reddy AP., 12(1):66-73, 2011 



ABSTRACT:Inhibition of Farnesyl pyrophosphate by allosteric site drug binding      

Kumar S, Pathak J, Asha PJ, Bandopadhyay R., 12(1):57-65, 2011 



ABSTRACT  In silico epitope rabies virus vaccine.   

Tomar NR, Marla SS, Chandra R, Kumar R, Kumar A., 12 (1): 46-52, 2011. 



ABSTRACT: In Silico mining of single nucleotide polymorphisms in expressed sequence tags dataset of Allium cepa L.   

Radhika V, Reddy DCL, Bhardwaj A, Aswath C., 12 (1): 34-45, 2011. 



ABSTRACT  Comparative evolutionary analysis of metallo-β-lactamases with reference to NDM1   

Odedra D, Mallick M, Vidyarthi AS, Shankaracharya D., 12 (1): 18-33, 2011. 



ABSTRACT  Prediction of mutagenicity of compounds by Support Vector Machine     Alternative site

Sharma A, Kumar R, Varadwaj P., 12 (1): 9-17, 2011. 



ABSTRACT: Support vector machine classification and prediction of lyases.   

Lavanya Rishishwar L, Mishra N, Pant B, Pant K, Pardasani KR, 12 (1): 1-8, 2011. 

2010 (2).



ABSTRACT  Molecular identification of Pinctada oysters by mitochondrial DNA analysis.   

Yassien MH, Obata M, Iman MK, Komaru A.,11 (2): 317-326, 2010.. 



ABSTRACT Model ligand-binding site of 2-Amino-5-chlorophenol 1,6-dioxygenase in Comamonas sp. CNB-1.                     

Monika K, Muralidhara Rao D,  Anuraj N, Yadav M, Nageswara Rao N, Venkateswarlu K., 11 (2): 302-316, 2010. 



ABSTRACT In silico analysis of α-L-rhamnosidase protein sequences from different source organisms.    

Yadav V, Yadav D, Singh Yadav KD., 11 (2): 293-301, 2010.. 



ABSTRACT Building a topological inference with qualitative criteria to predict the structural family of a protein sequence.      

Gaci O., 11 (2): 11 (2): 282-292, 2010.. 



ABSTRACT Predicted 3D structure, active site and ligand docking of serine acetyltransferase, a drug target for Entamoeba histolytica.  

Agarwal SM, Raghav D, Kumar A., 11 (2): 11 (2): 265-281, 2010.. 



ABSTRACT Analysis of array CGH data for the detection of single-cell chromosomal imbalances.
Ampe M, Verbeke G, Vanneste E, Vermeesch JR., 11 (2): 244-264, 2010. 



ABSTRACT Target sites for microRna expressed in pancreatic islets in type 2 diabetes mellitus associated genes.
Sripathi VR, Pal-Bhadra M, Arora N, Santosh S, Ray P, Banerjee AK, Murty USN, Bhadra U., 11 (2): 224-243, 2010


ABSTRACT XML storage model preserving relational integrity constants and complex types
Kasri LA, Chenfour N., 11 (2): 217-223, 2010


ABSTRACT Inferring the kinetic constants of cyclin-triggered expression of Cdc20 gene in eukaryotic cell cycle
Lecca P, Palmisano A., 11 (2): 177-216, 2010

2010 (1) 


ABSTRACT:Full-length DNA cloning, sequence analysis and transmembrane topology modelling of putative 

Trypanosoma brucei rhodesiense oligosaccharyl transferase (TbOST I).

Baticados WN, Inoue N, Sugimoto C, Nagasawa H, Baticados AM., 11 (1): 162-176, 2010



ABSTRACT: Statistical approach to assign functional regulators in gene expression compendia

Anyiawung FC,  Verbeke G  Valkenborg D,  Zhao H, Marchal K, Engelen K., 11 (1): 145-161, 2010



ABSTRACT: Structural model of the mammalian target of rapamycin (mTOR) kinase domain

Tobak A, Arora S, Welsh WJ., 11 (1): 128-144, 2010



ABSTRACT: Selection and evaluation of gene-specific biomarkers in pre-clinical and clinical microarray experiments

Lin D, Shkedy Z, Molenberghs G, Talloen W, Goelhmann HWH, Bijnens L., 11 (1): 106-127, 2010



ABSTRACT: Functional and comparative genomics studies on Carboxydothermus hydrogenoformans specific to CO-metabolism and hydrogen production.

Rajadurai  CP, Kumar GP., 11 (1): 90-105, 2010



ABSTRACT:  Brain tumor biomarker identification via differential gene expression analysis of microarray data using CGAP.

Ravichandran S, Jeyakumar N., 11 (1): 83-89, 2010



ABSTRACT: A Linear Programming Approach to Study Phylogenetic networks in Honeybee.
Chouhan U, Pasandi KR.,
11 (1): 72-82, 2010



ABSTRACT:  In silico identification of functions enduring horizontal gene transfer in archaea: a comparative approach
Tamanna A, Nandi T.,
11 (1): 59-71, 2010



ABSTRACT: Identification & HLA distribution analysis of CD4+ epitope-based vaccine candidates for H1N1 Swine Influenza.
Sarangi AN, Rathi B, Trivedi N, Gupta S.,
11 (1): 47-58, 2010



ABSTRACT: Phylogenetic Clustering and Comparative Homology Modelling of Nitrobenzene Nitroreductase from Pseudomonas pseudoalcaligenes JS45 and Comamonas sp. CNB-1
Monika K, Dowlathabad MR, Spain JC, Kadiyala V.,
11 (1): 38-46, 2010



ABSTRACT:     csPCR: A computational tool for the simulation of the Polymerase Chain Reaction
Dasu S, Williams A, Fofanov Y, Putonti C.,
11 (1): 34-37, 2010   


ABSTRACT: Structural and docking analysis of HIV-1 integrase and Transportin-SR2 interaction: Is this a more general and specific route for retroviral nuclear import and its regulation?
Shityakov S, Rethwilm A, Dandekar T.,
11 (1): 19-33, 2010

ABSTRACT: Beyond single p-value cut-offs: Methods to improve decision making in GO enrichment analysis of microarray experiments

De Haan JR, Wehrens R, Bauerschmidt S , Van Schaik RC, Piek E, Buydens LMC., 11 (1): 1-18, 2010


2009 (2)



FULL-TEXT:  [WORD]   [PDF]      

ABSTRACT:Analysis of clustered microRNA in biological pathways

Mookherjee S, Sinha M, Mukhopa dhyay S, Bhattacharyya NP, Mohanty PK., 10 (2): 280-296, 2009



ABSTRACT:In Silico analysis of translation initiation sites from P. falciparum
Patakottu BR, Mamidipally C, Patankar S, Noronha S., 10 (2): 259-279, 2009



ABSTRACT:Effect of iron deprivation on expression of sphingomyelase in pathogenic serovar Lai
Velineni S, Ramadevi S, Asuthkar S, Sritharan M., 10 (2): 241-258, 2009



ABSTRACT:An algorithm for edit distance of genome rearrangement based on seriate-block mutation
Zhang S, Lai J ., 10 (2): 233-240, 2009



ABSTRACT:Single nucleotide polymorphisms and indels in expressed sequence tag libraries of turmeric (Curcuma longa L.)
Chandrasekar A, Riju A, Sithara K, Anoop S , Santhosh J Eapen ., 10 (2): 224-232, 2009



ABSTRACT:Prolyzer: A wireless application for physico-chemical analysis of protein sequences
Pabla SS, Pabla SS, Sajja SP.,
10 (2): 218-223, 2009



ABSTRACT:GENOVA: A rapid genome visualization and functional genomics software applied to strain comparisons in Staphylococcus aureus
Liang C, Wolz C, Herbert S, Bernhard J, Engelmann S, Hecker M, Götz F, Dandekar T., 10 (2): 201-217, 2009


ABSTRACT:Identification of active gene modules during pancreatic development
Gao S, Wang X., 10 (2):191-200, 2009


ABSTRACT:Use of computational and structural bioinformatic strategies in controlling fusarium wilt in cotton
Prabhakaran S, Srividya V, Bharathi N, Jayakanthan M, Manikanda Boopathi N, 10 (2):180-190, 2009.



2009 (1) Under redaction 2018

ABSTRACT:DyeML: XML-based format for handling natural organic dyes       
Aghoutane B, Benslimane R, Chenfour N, Elbannay O, Meknassi M 10 (1):156-164, 2009


ABSTRACT: Designing of drug for removal of methylation from Tcf21 gene in lung cancer       
Gupta SK, Singh A, Srivastava M
10 (1):149-155, 2009.        

ABSTRACT: Determination of antioxidant stability in heated mixture of oils by neural network       
Valantina R, Neelamegham P
10 (1):134-148, 2009

ABSTRACT: Molecular function of Pfam Domain DUF294 by sequence analysis and homology modeling       
Gononesekere NCW, Beaudry S, Tasovsky I
10 (1):125-133, 2009

ABSTRACT:In Silico inhibitors against cinnamyl alcohol  dehydrogenase (CAD) cloned and sequenced from Leucena leucocephala (tree).

Sekhar NP, Kumar RD, Sirisha VL, Prashant S Kavi Kishor PB 10 (1):103-124, 2009


ABSTRACT: Prediction of 3- dimensional structure of GL12 of Homo Sapiens

Sreekanth P, Narayan J.,   10 (1):98-102, 2009


ABSTRACT: In silico identification of small interfering RNA (siRNA) in the putative genes of White Spot Syndrome virus

Singh V, Somanski P.,   10 (1):93-97, 2009


ABSTRACT: Genetic algorithm self-adaptive mutation rate for DNA folding (GASAMR)

Mezher MA, Khader AT   10 (1):82-92, 2009 


ABSTRACT: A statistical method for verification of rareness in DNA sequences using sequence encoding

Meena K, Menaka K, Sundar TV, Subramanian KR., 10 (1):74-81, 2009. 


ABSTRACT:Multiple contrast test for detecting monotonic does-relationship and FDR-adjusted confidence intervals for selected parameters in a microarray setting

Lin D, Shkedy Z, Burzykowski T,  Yekutieli D, De Bondt A, Goehlmann H, Talloen W,  Bijnens L., 10 (1):67-73, 2009.

ABSTRACT: Prediction 0f 3-dimensional structure of ORF3 protein of genotype 1 hepatitis E virus

Rathi B, Naik S, Sarangi AN, Aggarwal R., 10 (1):60-66, 2009.


ABSTRACT:A systematic approach to understanding E. coli responses to oxygen: from raw microarray data to pathways and published abstracts

Maleki-Dizaji S, Holcombe M, Rolfe MD,  Fisher P  Green J,  Poole RK,   Graham AI., 10 (1):51-59, 2009.


ABSTRACT:In silico identification of tandem inter/intra-generic genetic elements (TIGE) using a random nucleotide generating Perl program.

Jha PK, Stashenko P., 10 (1):40-50, 2009.



ABSTRACT:Derivation of a protein marker from  heat denatured protein aggregate

Lahiri T, Mishra H, Kumar U, Misra K., 10 (1):29-39, 2009.


ABSTRACT:Identification of potential targets and lead molecules for designing inhibitory drugs against Chlamydophila pneumoniae

Harikishan E, Reddy EH,  Satpathy GR., 10 (1): 14-28, 2009.



ABSTRACT:Homology modelling, molecular dynamics and docking studies of human GLUT5 protein involved in intestinal transport

Padmavathi GV, Saralakumari D, Nataraj Sekhar P., 10 (1):1-13, 2009.


2008 (2) Under redaction 2018



ABSTRACT: In silico analysis of PCR amplified DOF (DNA binding with one finger) transcription factor domain and cloned genes from cereals and millets

Kushwaha H, Gupta N, Singh VK, Kumar A, Yadav D., 9 (2):130-145, 2008.



ABSTRACT: MOTIFA (Motif Analizer) examination of interregional and intraregional distribution of short DNA motifs

Sucaet Y, Magrath C., 9 (2):121-129, 2008.


ABSTRACT: Homology based 3D-structure modeling of glucose specific Sesbania stem lectin

Saxena S, Das HR, Das D, Biswas S., 9 (2):113-120, 2008.


ABSTRACT: CateGOrizer: A web-based program to batch analyze gene ontology classification categories

Hu Zhi-Liang, Bao J, Reecy JM., 9 (2):108-112, 2008



ABSTRACT: In-silico study on interaction of active binding sites of proteins with calcium oxalate monohydrate

Bijarnia RK, Kaur T, Naik PK, Singla SK, Tandon C., 9 (2):92-107, 2008


2008 (1) Under redaction 2018



ABSTRACT: Identification of SSR-ESTs corresponding to alkaloid, phenylpropanoid and terpenoid biosynthesis in MAP's

Tripathy KP, Roy S, Khan F Shasany AK, Sharma A, Khanuja SPS.,  9 (1):78-91, 2008

ABSTRACT:Prediction of the putative function of mouse WDR13 protein

Murthy BSN,  Pandit MW, Singh L., 9 (1):60-77, 2008.


ABSTRACT:In silico faulty ubiquitin-proteasome system in pathogenesis of Parkinson's disease

Lecca P.,  9 (1): 30-43, 2008.

ABSTRACT:A comparison of information on molecular interactions available in full-length publications versus abstracts
Mahadevan U, Bhate J, Raghunath A,  Kashyap S, Dey PC, Prakash N, Bhat B, Mol L, Wong, L.,  9 (1): 21-29, 2008

ABSTRACT: Elucidating the role of CREBBP co-activator in erythroid differentiation by literature mining and analysis

Iyer J, Raghunath A, Bhate J, Wong L.,  9 (1): 12-20, 2008


ABSTRACT:In silico analysis of P5CS gene evolution in plants

Kumari A,  Patade VY, Suprasanna P., 9 (1): 1-11, 2008.



2007 (2) Under redaction 2018




ABSTRACT:     Molecular evolution of archaeal CRISPR and Cas genes

Chatterjee R, Dutta A, Chaudhuri K, 8 (2): 189-204, 2007

ABSTRACT: Structure and function prediction of a hypothetical protein (Q307B9_SPIPL) of Spirulina platensis (Nordstedt) Geitler
Lakshmi PTV, Uma Maheswari S, Annamalai A,
8 (2): 179-188, 2007.

ABSTRACT: Constructing phylogeny from whole genome alignment

Chan PY, Lam TW, Liu CM, Yiu SM 8 (2) : 165-178, 2007

ABSTRACT: The 3D structure of the Japanese Encephalitis helicase, using homology based molecular modelling techniques

Vlachakis D, Brancale8 (2) : 154-164, 2007

ABSTRACT: Shape-to-String Mapping: A Novel Approach To Clustering Time-Index Biomics Data

Antoine W, Miernyk JA  8 (2) : 139-153, 2007

2007 (1) Under redaction 2018


ABSTRACT: In-silico TAT-PTD prediction for cell penetrating peptides.

Tandon C, Aggarwal A, Goel P, Sengupta D, Naik P.,  8 (1) : 115-138, 2007.


ABSTRACT: Binding Modes, binding Affinities and ADME Screening of HIV-1 NNRTI Inhibitor: Efavirnez and its analogues.

Sengupta D, Verma D, Naik PK., 8 (1) : 99-114, 2007.



ABSTRACT:A Unified Framework for Finding Differentially Expressed Genes in MPTP Mouse Model for Parkinson’s Disease

Shaik J, Yeasin M., 8 (1) : 84-98, 2007.


ABSTRACT:In silico Cis-regulatory Element Analysis of Seed Storage Protein Promoters Cloned from Different Cultivars of Wheat, Rice and Oat

Yadav D,  Singh VK, Singh NK.,  8 (1) : 75-83, 2007.


ABSTRACT:In Silico Identification of Antioxidant gene G6PD in Caenorhabditis elegans

Jitendra N, Prachi S, Alpana V, Shakti S., 8 (1) : 61-74, 2007.

ABSTRACT:An Indigenous Integration System for Biodiversity Databases

Sarinder KKS, Lim LHS, Dimyati K, Merican AF., 8 (1) : 56-60, 2007.

ABSTRACT:Unbalanced Factorial Design: Type I, II and III Sums of Squares
Boyacioglu H, Baskan O 8 (1) : 56-55, 2007.  


ABSTRACT: MMFF94x and AMBER99 force fields using aspartic-serine-metallo proteases and sugar-binding proteins as different data sets.  
Singh H, Marla SS, Verma D.,
8 (1) : 45-55, 2007.


ABSTRACT:Database and interactome map of genes involved in oral cancer

Gadewal NS, Zingde SM., 8 (1) : 41-44, 2007.


ABSTRACT: PIDA: A new algorithm for pattern identification
Putonti C, Pettitt BM, Reid JG, Fofanov Y., 8 (1) : 30-40, 2007.

ABSTRACT:Plasma proteome knowledgebase: exploring disease biomarker correlations
Iyer J, Srinivas VM, Khamari L, Sequeira JM, Das N, Periasamy UR, Bhate D., 8 (1) : 18-29, 2007.


ABSTRACT: A comparison of information on molecular interactions available in full-length publications versus abstracts
Mahadevan U, Bhate J, Raghunath A,  Kashyap S, Dey PC, Prakash N, Bhat B, Zachariah LL, Wong L.,  8 (1) : 8-17, 2007.

ABSTRACT:In silico tools for evaluation of conservation homology among interleukins.
Krupanidhi S, Madhukar SS, Doughman SD
.,  8 (1) : 1-7, 2007.

2006 (2) Under redaction 2018

ABSTRACT: Plant promoter prediction tool and isolation of a promoter from Porteresis coarctata   
Mahalakshmi S,
Krishna NC, Rao KV,  Reddy VD., 7 (2) : 118 - 139, 2006.

ABSTRACT: A flexible spot recognition method for SNP microarray systems
Huang CY, Liu L., 7 (2) : 101-117, 2006.

ABSTRACT: A computer-intensive method to analyse microarray experiments with a very small number of replications in case of heteroscedasticity
Muhammad MA, Neuhäuser M., 7 (2) : 90-100, 2006.

ABSTRACT: In silico Homology modeling and Structure assessment of Holo (Acyl Carrier Protein) synthetase from Treponema pallidum   
Dowlathabad MR,  Venkata RD, Rallapalli R., 
7 (2) : 85 - 89, 2006.

ABSTRACT: Structural Classification of Protein Using Surface Roughness Index
Singha S, Lahiri T, Dasgupta AK, Chakrabarti P., 7 (2) : 74-84, 2006.

ABSTRACT: Genomic predictions for T Lymphocyte epitopes on Plasmodium falciparum (Malaria)
Singh SP, Khan F Mishra BN.,
7 (2) : 69-73, 2006.

ABSTRACT: Conservation of the regulatory pho-box in acetoacetyl-CoA reductase promoters across bacterial PHB biosynthetic metabolic pathway
Khan F, Singh SP, Mishra BN.,
7 (2) : 57-68, 2006.


2006 (1)



ABSTRACT: Extending the Dynamic Range of Signal Intensities in DNA Microarrays
Choi D, O’Malley JP, Lasarev MR, Lapidus J, Lu X, Pattee P, Nagalla SR., 7 (1) : 46-56, 2006.


ABSTRACT: Comparative structure analysis of Chorismate synthase   

Marla S , Yalamanchili HK,  Gelli P, Singh HK, Praveen G, Ghatta G, Srikanth S, Goutham K., 7 (1) : 35-45, 2006


ABSTRACT: Statistical Potential Determining Protein Interaction Sites

Williams G., 7 (1) : 32-34, 2006

ABSTRACT: Classification of incipient Alzheimer patients using gene expression data: Dealing with potential misdiagnosis
Robbins K, Joseph S, Zhang W, Rekaya R,  Bertrand JK., 7 (1) : 22-31, 2006.


ABSTRACT:Clusterer: extendable java application for sequence grouping and cluster analyses

Klepac-Ceraj V, Ceraj I, Polz MF., 7 (1) 15-21, 2006

ABSTRACT: A correction for expression value dependencies in Affymetrix

Broemel F, Kruse E, Neuhäuser M, Dürig J, JÖckel KH., 7 (1) : 1-14, 2006

 2005 (2)


ABSTRACT:Boosting Speed of MS/MS Peptide Sequencing via Database Search by Spectral Profile Comparison.  

Liu J, Carrillo B, Yanofsky C, Beaudrie C, Morales F, Kearney R.,  6 (2) 174-183, 2005.


ABSTRACT: The Effect of Inverse Document Frequency Weights on DNA Sequence Retrieval.

O'Kane KC.,  6 (2) 162-173, 2005.    


ABSTRACT: Binding of fork head protein to DNA partly determined by base cooperation.

Mach V.,  6 (2) 149-161, 2005.


ABSTRACT: Analysis of n-nary tract frequency in the genome

Ophir D, Gera A.,  6 (2) 142-148, 2005


ABSTRACT: In silico identification of cis-regulatory elements in Mesorhizobium loti

Khan F, Agrawal S, Mishra BN 6 (2) : 129-141, 2005



ABSTRACT:A microarray model for computation of absolute gene expression level.      

Xu, M., 6 (2): 121-128, 2005.


ABSTRACT:MIPE an XML format to facilitate the storage and exchange of PCR-related data.       

Aerts JA, Veenendaal T., 6 (2) : 114-120, 2005.


2005 (1)


ABSTRACT: Automated Long Oligo Design on Consensus Regions of Similar Genomes.
Schretter C, Milinkovitch MC., 6 (1) 107 -113, 2005.

ABSTRACT: Combining Kernel Dimension-Reduction with Regularized Classifiers for Tissue Categorization.
Shen L, Tan EC., 6 (1) : 91-106, 2005.

ABSTRACT: In silico identification and modelling of a putative iron-regulated TonB-dependant outer membrane receptor protein

from the genome of Leptospira interrogans serovar Lai.
Sritharan M, Ramadevi S, Pasupala N, Asuthkar S, Tajne S., 6 (1) : 74-90, 2005.


ABSTRACT: Eulerian Superpath Approach to Correct Sequencing Error in Shotgun Assembly

Shi W, Zhou W, Zheng W., 6 (1) : 65-73, 2005.



ABSTRACT: From prediction of subcellular localization to functional classification: Discrimination of DNA- packing and other nuclear proteins
Höglund A, Dönnes P, Adolph HW, Kohlbacher O., 6 (1) : 51-64, 2005.



ABSTRACT: Substitution of polymorphic amino acids in proteins:Predicting functional alterations using amino acid properties.
Baksi K, Bhattacharyya NP., 6 (1) : 42-50, 2005.



ABSTRACT: Morphometric and Distance Computational Software for evolutionary studies.
Carvajal-Rodríguez A, Rodríguez MG., 6 (1) : 34-41, 2005.


ABSTRACT: Support vector machines and bioinformatics.

Sethi RJ., 6 (1) : 22-33, 2005.



ABSTRACT: A novel method to predict protein subcellular localizations.
Huang J, Shi F., 6 (1) : 8-21, 2005.

ABSTRACT: MolVRML: build VRML models of 3D molecular structures.
Zou Y., 6 (1) :1-7, 2005.

2004 Under Redaction 2018


ABSTRACT: Prediction of transcriptional regulation by Dlx and Msx homeodomain proteins
Swarnalatha M, Jutur PP, Amouda V, Mathur PP, Reddy AR., 5 : 132-145, 2004.


ABSTRACT: In silico gene identification and homology modeling of Chorismate synthase in Clostridium difficile  

Sunita T, Ramadevi S., 5 :129-131, 2004.


ABSTRACT: MCM-Based clustering for time-course gene expression data

Wu FX, Zhang WJ, Kusalik AJ.,  5 :102-128, 2004.


ABSTRACT: Parallel DNA fragment assembly algorithm based on Eulerian superpath.

Zheng W, Shi W, Zhou W., 5 : 91-101, 2004.


ABSTRACT: Bayesian mixture modelling of species divergence.
Adam A,  Mengersen K, Baker P.,
5 : 69-90, 2004.

ABSTRACT: Reliability of RNA secondary structure prediction with XNAfold.

Zou Y., 5: 59-68, 2004.


ABSTRACT: Wave analysis of microarray expression as predictor of gene expression in tumors.

Gupta A, Agrawal S 5 : 49-58, 2004.


ABSTRACT: Phylogenetic clustering and secondary structural analysis of Plant Terpenoid Synthases.

Singh IV, Agrawal S, Khan F,  Mishra BN 5 : 32-48, 2004.


ABSTRACT: GASP: a new genetic algorithm (based on) surviving probability.

Carvajal-Rodríguez A 5 : 23-31, 2004.


ABSTRACT: Prediction of protein homo-oligomers by incorporating quasi-sequence-order effect.

Zhang SW, Pan Q, Zhang HC, Wu YH, Shi JU 5 : 13-22, 2004.


ABSTRACT:  Molecular phylogenetics and functional evolution of major RNA recognition domains of recently cloned characterized autoimmune RNA-binding particle.

Suleymanoglu E 5: 1-12, 2004.     


2003 Under Redaction


ABSTRACT: Identification of GltC transcription factor binding DNA motifs and its novel co-regulated genes in nitrogen fixing bacteria

Khan F,  Agrawal S,  Mishra BN.,  4:106-114, 2003


ABSTRACT: Matching carbohydrate-binding domains in Arabidopsis thaliana genome: development of a lectin database
Moreno FB, Facó F, Ceccatto VM, Sampaio AH, Costa ABS, Freitas JLT, Nogueira LL, Lima ME,  Lima-Filho JL, Cavada BS,  4:96-105, 2003


2002 Under Redaction

          [WORD] [PDF]
       In Silico Markovian Bioinformatics for predicting 1Ha-NMR chemical shifts in mouse Epidermis Growth  Factor(mEGF).
              Díaz HG, De Armas RR, Uriarte E. 3:83-95, 2002. 

              Chemical Bio-actives Center, Department of Chemistry, Central University of "Las Villas" 54830, Cuba. Department of Organic Chemistry,  Faculty of Pharmacy,  University of Santiago de Compostela 15706, Spain


           [WORD] [PDF]
         Simple Object Access Protocol (SOAP) for Bioinformatic Software Interoperability  

              Xia Y, Stinner RE, Wang X.  3:74-82, August 2002.

              NSF Center for IPM North Carolina State University, Raleigh, NC 27695-7553, 2 Department of Plant Pathology North Carolina State University Raleigh, NC 27695, USA.

         [WORD] [PDF]   

              BAO, A Biological and Chemical Ontology For Information Integration  

              Ben-Miled Z, Webster YW, Nianhua L, Bukres O, Nayar AK, Martin J, Oppelt R.  3:60-73, June 2002  

              Electrical Engineering Department, Purdue School of Eng. &: Tech. Computer &: Information Science, Purdue School of Science, Lilly Corporate Center, Eli Lilly and  Company, USA.


         A software package for drawing ideograms automatically.    

              BÖhringer S, GÖdde R, BÖhringer D, Schulte T, Epplen JT 3 : 51-59, May 2002
              Department of molecular human genetics,  Ruhr University Bochum, Department of ophthalmology, University clinics, Düsseldorf, Germany

         The corporate information factory as a Bioinformatics framework    

              Casey, RM  3:42-50, April 2002.  

              Agilent Technologies, Inc. Information Technology, Agilent Technologies, Inc. Headquarters 395 Page Mill Rd. Palo Alto, CA 94306,  USA

2001 Under Redaction


             [WORD] [PDF]

         An unsupervised neural network approach for discovery of gene expression patterns in B-cell lymphoma .

              Azuaje F,  2:26-41, 2001. 

              Department of Computer Science, Trinity College, Ireland


         Development of a web-based informatics educational exercize in genomics.     

              Flower R 2:22-25, 2001  

              A/Professor, Department of Haematology and Transfusion Medicine, University of Sydney and Principal Scientist, PaLMS Transfusion Services, Northern Sydney Health

 1996-2000 Under Redaction


         Bioinformatics and Extended Markup Language (XML).
              Guerrini VH, Jackson D
1:12-21, 2000.  

              Distributed Systems Technology Centre (DSTC) Pty. Ltd and school of Veterinary Science,  University of Queensland, St Lucia, Queensland 4172, Australia.

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