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OJBTM
Online Journal of Bioinformatics ©
Volume 10 (2): 218-223, 2009.
PROLYZER
: A wireless application for physico-chemical
analysis of protein sequences
Pabla
SS, Sajja SP.
Department of
Computer Science,
ABSTRACT
Pabla SS, Sajja
SP., PROLYZER : A wireless application for physico-chemical analysis of protein sequences, Onl J Bioinform., (2): 218-223, 2009. Recent advances in processing capabilities of hand held
devices have prompted the development of wireless applications that alleviates
the user from physical “wired” connectivity. Moreover, there has been an
immense increase in internet connectivity speed of wireless devices. A new
paradigm of bioinformatics applications that use both increased processing and
connectivity abilities of these devices has promising potential. PROLYZER is
one such application designed to calculate various Physico-chemical
properties [1] of a protein sequence. It acquires input protein sequence from
GENBANK [5] database via the Genbank Identification
number (gi number). It computes the following
parameters: Total number of amino acids, Molecular formula, Atom count,
Molecular weight, Grand average of hydropathicity
(GRAVY) [2], Extinction Co-efficient [3] and Absorbance [4]. PROLYZER is
supported by any wireless device which is MIDP2.0, CLDC1.0 and Java enabled. It
uses internet connectivity for sequence procurement and local processing
capacity for performing calculations. The future prospects include development
of wireless devices completely dedicated to run bioinformatics applications.
Keywords: Bioinformatics, Protein sequence,
GENBANK, Physico-chemical analysis, Java, MIDlet, Mobile phones.