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Online Journal of Bioinformatics©
Volume 8 (1):61-73, 2007.
In Silico identification of antioxidant gene G6PD in Caenorhabditis elegans.
Jitendra N, Prachi S, Alpana V, Shakti S
Bioinformatics Centre, AIB, Amity University, Noida, UP, INDIA
Jitendra N, Prachi S, Alpana V, Shakti S., In silico identification of Antioxidant gene G6PD in Caenorhabditis elegans, Onl J Bioinform., 8 (1) : 61-73, 2007. Interest in C. elegans as a target for drug discovery has grown considerably, particularly in the pharmaceutical and agro-chemical industries. C. elegans is a proven model system for investigating neurodegenerative diseases and physiological processes. Several neurodegenerative disorders have been modeled in C. elegans including Huntingtonís disease, Alzheimerís disease, Parkinsonís disease, and cancer. C. elegans models are also used to screen antioxidants, diabetes, and determining alterations in gene expression. In humans there are 81 genes known to have antioxidant properties with 60% similarities in the genome of Caenorhabditis elegans with Homo sapiens, but only five genes Prdx-2 Prdx-3, clk-2, clk-1 and gro-1, show antioxidant properties. These findings suggest that other unknown genes of Caenorhabditis elegans may have antioxidant properties. Using BLAST we found an antioxidant gene in Homo sapiens with the genome of Caenorhabditis elegans identified a locus in contig named B0035 that showed good homology with G6PD gene in Homo sapiens geneID 2539 present on chromosome number X located at Xq28.
KEY WORDS: Antioxidant, Caenorhabditis elegans, BLAST, G6PD gene, Contig